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The following are software projects that have been produced in my lab:

Genome Sequence Software

MySSP

This program simulates DNA sequence evolution under a variety of conditions. It is described in:
Rosenberg, M.S. (2005) MySSP: Non-stationary evolutionary sequence simulation, including indels. Evolutionary Bioinformatics Online 1:81-83. PDF

An e-mail address is requested for tracking downloads.

Latest release: 1.0.3.5 (April 13, 2006)

IndelCoder

This program takes a NEXUS file containing aligned DNA sequences and recodes the gaps using the simple indel coding algorithm. The program was developed for use in:
Ogden, T.H., and M.S. Rosenberg (2007) How should gaps be treated in parsimony? A comparison of approaches using simulation. Molecular Phylogenetics and Evolution 42(3):817-826. PubMed PDF (Erratum: 2008, 46(2):807-808 PDF)

An e-mail address is requested for tracking downloads.

Latest release: 1.0.1.1 (March 23, 2010)


Spatial Analysis Software


Meta-Analysis Software

Fail-Safe Number Calculator

This program calculates fail-safe numbers for meta-analysis based on the methods described in:
Rosenberg, M. S. (2005) The file-drawer problem revisited: A general weighted method for calculating fail-safe numbers in meta-analysis. Evolution 59(2):464-468. PubMed PDF

An e-mail address is requested for tracking downloads.

Latest release: 1.0.2.11 (February 5, 2008)